If I’m not mistaken:

Season 1 was pretty much volume 1 (”Genesis”)
Season 2 was volume 2 (”Generations”)
Season 3 is being split between two different storylines, “Villains” and currently “Fugitives”.

Hope that answers it for ya.

The phone thing and rebel—- I also thought straight off that it might be the woman from season one who could control the internet and send messages with her head. She was only in the show for 5 minutes then disappeared. Whatever happened to her? Her, Parkman, Ted ( who else was there?) were like “lets go find primatech and find out why they are tagging people with powers” then she was never seen again. Did the actress that played her get a part on another show, or even die maybe, or something like that? I also thought it could be Micah, OR ( this is a bit far out) maybe even Nathan. Perhaps he is only doing this because he is forced into it and is trying to do what he can. (yeah I know that theory is a bit rubbish)

Sylar’s prodigy—-who else noticed that he WROTE the address of his dad down instead of talking out loud. I think he figured out that he could lie to Sylar by writing down some false information and Sylar wouldn’t detect the lie because he didn’t speak it. I hope they get a good famous actor to be Sylar’s dad. Perhaps a big star in the Tom Cruise/Kurt Russel sort of league maybe? Also, it might be quite cool if Luke turns out to be Sylar’s dad or something like that. I first htought he’s probably Sylar’s young brother or something but then I had a thought- what if he is either getting younger as time goes by, OR he travels time at some point (why not- half of them have done it already) and ends up becoming Sylar’s dad in the past. That would explain why Sylar’s dad kept fairly close to his younger self and confided in him and why he knew to hit the road out of the neighbourhood before the whole government crackdown was about to start. Far fetched I know- but just an idea .

Daphne—- I don’t think she is dead. 1st of all she might survive from the bullet wounds. 2nd- Claire was standing right beside her and got shot loads of times, with blood going everywhere. There’s a good chance some blood got on Daphne and she got healed. they could easily bring her character back through a quick flashback to some blood flying through the air and onto her and then she wakes up 10 minutes later and runs away ( or she gets captured). She might even blame matt for leaving her behind and get angry if they want to turn her into a baddie.

Hiro/Ando—- It’s obvious that in that future scene where Ando ‘kills’ Hiro that they are arguing because only one of them can be saved or something and they each want to save the other. So, Ando zaps Hiro so that he will be able to use his power. I also think that will be the way Hiro gets to use his power. If Ando zaps him then he will be able to use some of his power. Also he could just wait until another eclipse, or the writers could do the same thing as before when he thought he had lost his power, maybe he will be able to bring them back again on his own. I’m sure the writers could have Dr Suresh explain something to do with adrenaline surges and Hiro’s brain being in the right state and stuff like that.

In the beginning of Season 2 Nathan got a warning cos he went to see his kids. His wife has a restraining order against him and he is not allowed to come near her or them.

Reasons why:
Think realistically, she knows her grandaughter’s phone number because she is her grandma.
Also she faxed Ando and Hiro, this shows how old and official she is that she still faxes people instead of email.
She can see the future in her dreams. So she knew Ando and Hiro would eventually go to India, so she faxed the message to them weeks earlier.
HRG is still working for her and they are planning something behind Nathans back. Perhaps she just wants to capture the bad super humans and let the good ones free (unlike Nathans Plan to capture everyone with powers).

There is a chance that Angela is texting so fast with the help of that girl from season 2 who can connect to the internet with her mind (she worked for the company too, remember.)

A CRY FOR MONICA MICAH AND MOLLY!?!!?!(MMM)
Where are Micah, Monica, and Molly? Their storylines were so fun and interesting. Besides the kids attract younger viewers! I hope they return if HRG has to go get them, and Claire warns them sort of like she did to Alex, in Building 26.

It would have been interesting to see which direction that relationship would have worked: Claire turning Adam or Adam turning Claire…or at least seeing the process of one trying to turn the other. Lots of potential there.